Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs79934428 chr1:152917491 G/T 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs7994803 chr13:46665060 T/C 5.87E-5 499 27.23 32.35 31.43 KM Plot
THCA rs79996963 chr3:97018060 G/A 5.11E-6 503 31.47 31.77 41.97 KM Plot
THCA rs80020194 chr10:105035954 A/G 2.74E-5 495 31.03 35.6 36.3 KM Plot
THCA rs8003102 chr14:24826154 T/C 1.42E-5 493 31.53 31.7 23.23 KM Plot
THCA rs80195659 chr16:79270441 C/G 3.55E-13 487 31.62 31.67 19.35 KM Plot
THCA rs80298134 chr19:33397644 G/A 6.02E-5 502 31.4 35.4 32.93 KM Plot
THCA rs80305807 chr8:60169542 C/A 6.35E-5 502 31.98 30.13 20.5 KM Plot
THCA rs80327774 chr10:104656671 T/C 7.09E-14 502 31.27 36.17 32.1 KM Plot
THCA rs80343107 chr4:1152336 C/T 1.94E-13 497 31.6 30.87 32.1 KM Plot
THCA rs804660 chr1:41572164 T/C 1.21E-7 501 27.33 30.53 31.9 KM Plot
THCA rs804661 chr1:41571681 T/G 6.95E-6 500 27.57 30.53 31.83 KM Plot
THCA rs806110 chr1:6053551 A/G 0.000121 499 32.6 27.23 18.58 KM Plot
THCA rs8075542 chr17:9286407 C/T 0.000151 489 31.03 32.93 30.07 KM Plot
THCA rs8102257 chr19:9830795 C/T 4.26E-6 503 31.45 32.9 32.9 KM Plot